diff --git a/services/core-store.js b/services/core-store.js
index 268e232..4bbf3eb 100644
--- a/services/core-store.js
+++ b/services/core-store.js
@@ -2,6 +2,7 @@
 
 const coreStoreQueryString = 'core_store';
 const configPrefix = 'core-store'; // Should be the same as the filename.
+const difference = require('../utils/getObjectDiff');
 
 /**
  * Import/Export for core-store configs.
@@ -14,15 +15,38 @@ module.exports = {
    * @returns {void}
    */
    exportAll: async () => {
-    const coreStore = await strapi.query(coreStoreQueryString).find({ _limit: -1 });
+    const formattedDiff = {
+      fileConfig: {},
+      databaseConfig: {},
+      diff: {}
+    };
+    
+    const fileConfig = await strapi.plugins['config-sync'].services.main.getAllConfigFromFiles(configPrefix);
+    const databaseConfig = await strapi.plugins['config-sync'].services.main.getAllConfigFromDatabase(configPrefix);
+    const diff = difference(databaseConfig, fileConfig);
 
-    await Promise.all(Object.values(coreStore).map(async ({ id, ...config }) => {
+    formattedDiff.diff = diff;
+
+    Object.keys(diff).map((changedConfigName) => {
+      formattedDiff.fileConfig[changedConfigName] = fileConfig[changedConfigName];
+      formattedDiff.databaseConfig[changedConfigName] = databaseConfig[changedConfigName];
+    })
+
+    await Promise.all(Object.entries(diff).map(async ([configName, config]) => {
       // Check if the config should be excluded.
-      const shouldExclude = strapi.plugins['config-sync'].config.exclude.includes(`${configPrefix}.${config.key}`);
+      const shouldExclude = strapi.plugins['config-sync'].config.exclude.includes(`${configName}`);
       if (shouldExclude) return;
 
-      config.value = JSON.parse(config.value);
-      await strapi.plugins['config-sync'].services.main.writeConfigFile(configPrefix, config.key, config);
+      const currentConfig = formattedDiff.databaseConfig[configName];
+
+      if (
+        !currentConfig &&
+        formattedDiff.fileConfig[configName]
+      ) {
+        await strapi.plugins['config-sync'].services.main.deleteConfigFile(configName);
+      } else {
+        await strapi.plugins['config-sync'].services.main.writeConfigFile(configPrefix, currentConfig.key, currentConfig);
+      }
     }));
   },
 
diff --git a/services/main.js b/services/main.js
index 0058d01..58a2f7e 100644
--- a/services/main.js
+++ b/services/main.js
@@ -44,6 +44,20 @@ module.exports = {
       });
   },
 
+  /**
+   * Delete config file.
+   *
+   * @param {string} configName - The name of the config file.
+   * @returns {void}
+   */
+   deleteConfigFile: async (configName) => {
+    // Check if the config should be excluded.
+    const shouldExclude = strapi.plugins['config-sync'].config.exclude.includes(`${configName}`);
+    if (shouldExclude) return;
+
+    fs.unlinkSync(`${strapi.plugins['config-sync'].config.destination}${configName}.json`);
+  },
+
   /**
    * Read from a config file.
    *
@@ -68,7 +82,7 @@ module.exports = {
    *
    * @returns {object} Object with key value pairs of configs.
    */
-  getAllConfigFromFiles: async () => {
+  getAllConfigFromFiles: async (configType = null) => {
     const configFiles = fs.readdirSync(strapi.plugins['config-sync'].config.destination);
 
     const getConfigs = async () => {
@@ -77,6 +91,11 @@ module.exports = {
       await Promise.all(configFiles.map(async (file) => {
         const type = file.split('.')[0]; // Grab the first part of the filename.
         const name = file.split(/\.(.+)/)[1].split('.').slice(0, -1).join('.'); // Grab the rest of the filename minus the file extension.
+
+        if (configType && configType !== type) {
+          return;
+        }
+
         const fileContents = await strapi.plugins['config-sync'].services.main.readConfigFile(type, name);
         fileConfigs[`${type}.${name}`] = fileContents;
       }));
diff --git a/services/role-permissions.js b/services/role-permissions.js
index d009eed..9511148 100644
--- a/services/role-permissions.js
+++ b/services/role-permissions.js
@@ -1,6 +1,7 @@
 'use strict';
 
 const { sanitizeEntity } = require('strapi-utils');
+const difference = require('../utils/getObjectDiff');
 
 const configPrefix = 'role-permissions'; // Should be the same as the filename.
 
@@ -15,30 +16,39 @@ module.exports = {
    * @returns {void}
    */
    exportAll: async () => {
-    const service =
-      strapi.plugins['users-permissions'].services.userspermissions;
+    const formattedDiff = {
+      fileConfig: {},
+      databaseConfig: {},
+      diff: {}
+    };
+    
+    const fileConfig = await strapi.plugins['config-sync'].services.main.getAllConfigFromFiles(configPrefix);
+    const databaseConfig = await strapi.plugins['config-sync'].services.main.getAllConfigFromDatabase(configPrefix);
+    const diff = difference(databaseConfig, fileConfig);
 
-    const [roles, plugins] = await Promise.all([
-      service.getRoles(),
-      service.getPlugins(),
-    ]);
+    formattedDiff.diff = diff;
 
-    const rolesWithPermissions = await Promise.all(
-      roles.map(async role => service.getRole(role.id, plugins))
-    );
+    Object.keys(diff).map((changedConfigName) => {
+      formattedDiff.fileConfig[changedConfigName] = fileConfig[changedConfigName];
+      formattedDiff.databaseConfig[changedConfigName] = databaseConfig[changedConfigName];
+    })
 
-    const sanitizedRolesArray = rolesWithPermissions.map(role =>
-      sanitizeEntity(role, {
-        model: strapi.plugins['users-permissions'].models.role,
-      })
-    );
-
-    await Promise.all(sanitizedRolesArray.map(async ({id, ...config}) => {
+    await Promise.all(Object.entries(diff).map(async ([configName, config]) => {
       // Check if the config should be excluded.
-      const shouldExclude = strapi.plugins['config-sync'].config.exclude.includes(`${configPrefix}.${config.type}`);
+      const shouldExclude = strapi.plugins['config-sync'].config.exclude.includes(`${configName}`);
       if (shouldExclude) return;
 
-      await strapi.plugins['config-sync'].services.main.writeConfigFile(configPrefix, config.type, config);
+      const currentConfig = formattedDiff.databaseConfig[configName];
+
+      if (
+        !currentConfig &&
+        formattedDiff.fileConfig[configName]
+      ) {
+        await strapi.plugins['config-sync'].services.main.deleteConfigFile(configName);
+      } else {
+        await strapi.plugins['config-sync'].services.main.writeConfigFile(configPrefix, currentConfig.type, currentConfig);
+      }
+
     }));
   },
 
diff --git a/services/webhooks.js b/services/webhooks.js
index 005a451..bb4c4ac 100644
--- a/services/webhooks.js
+++ b/services/webhooks.js
@@ -6,6 +6,7 @@
 
 const webhookQueryString = 'strapi_webhooks';
 const configPrefix = 'webhooks'; // Should be the same as the filename.
+const difference = require('../utils/getObjectDiff');
 
 module.exports = {
   /**
@@ -14,14 +15,38 @@ module.exports = {
    * @returns {void}
    */
    exportAll: async () => {
-    const webhooks = await strapi.query(webhookQueryString).find({ _limit: -1 });
+    const formattedDiff = {
+      fileConfig: {},
+      databaseConfig: {},
+      diff: {}
+    };
+    
+    const fileConfig = await strapi.plugins['config-sync'].services.main.getAllConfigFromFiles(configPrefix);
+    const databaseConfig = await strapi.plugins['config-sync'].services.main.getAllConfigFromDatabase(configPrefix);
+    const diff = difference(databaseConfig, fileConfig);
 
-    await Promise.all(Object.values(webhooks).map(async (config) => {
+    formattedDiff.diff = diff;
+
+    Object.keys(diff).map((changedConfigName) => {
+      formattedDiff.fileConfig[changedConfigName] = fileConfig[changedConfigName];
+      formattedDiff.databaseConfig[changedConfigName] = databaseConfig[changedConfigName];
+    })
+
+    await Promise.all(Object.entries(diff).map(async ([configName, config]) => {
       // Check if the config should be excluded.
-      const shouldExclude = strapi.plugins['config-sync'].config.exclude.includes(`${configPrefix}.${config.id}`);
+      const shouldExclude = strapi.plugins['config-sync'].config.exclude.includes(`${configName}`);
       if (shouldExclude) return;
 
-      await strapi.plugins['config-sync'].services.main.writeConfigFile(configPrefix, config.id, config);
+      const currentConfig = formattedDiff.databaseConfig[configName];
+
+      if (
+        !currentConfig &&
+        formattedDiff.fileConfig[configName]
+      ) {
+        await strapi.plugins['config-sync'].services.main.deleteConfigFile(configName);
+      } else {
+        await strapi.plugins['config-sync'].services.main.writeConfigFile(configPrefix, currentConfig.id, currentConfig);
+      }
     }));
   },